PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G121500.1.p
Common NameGLYMA_12G121500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 292aa    MW: 32086.2 Da    PI: 6.9696
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.92.2e-35201232100
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssas 83 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+ l+++        +          +++++++
  Glyma.12G121500.1.p  20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDRLAELppwhppthE----------EEKQNDA 99 
                          79**************************************************************443332220..........2222222 PP

                  TCP  84 nsssg.............kaaksaakskks 100
                          + s +             +      + +++
  Glyma.12G121500.1.p 100 AGSTPkaigafssthadtD------PINFQ 123
                          2222233444432212220......22222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-3120104IPR005333Transcription factor, TCP
PROSITE profilePS5136931.8722280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRTGVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD  60
RPSKAVDWLI KKAKTSIDRL AELPPWHPPT HEEEKQNDAA GSTPKAIGAF SSTHADTDPI  120
NFQTNNSSED LGLSLHCFQD HPGLIHWQSQ QTGAHQTPPS NEHQIRTLFA GSTPGGFENH  180
YQRSVTWNNE ATTTDHVNRL GFILNSQPFI GQGSTSAYAQ SGGTLQSSFS FPMTSPSELH  240
RPQPVNQPSI FDSRFVSDGL ADFCIPDRIQ GVEENHGVAS NRPSSSPSSI H*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225410.0cotyledon| pod
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-175AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582290.11e-173PREDICTED: transcription factor TCP4-like
RefseqXP_006582291.11e-173PREDICTED: transcription factor TCP4-like
TrEMBLI1LSA40.0I1LSA4_SOYBN; Uncharacterized protein
STRINGGLYMA12G14200.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-49TCP family protein